凡纳滨对虾E75基因可变剪切形式的鉴定与分析
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中国科学院海洋研究所

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国家自然科学基金(31672632,31702320,41876167)


Identification and analysis of alternatively spliced E75 gene inPacific white shrimp (Litopenaeus vannamei)
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Key Laboratory of Experimental Marine Biology,Institute of Oceanology,Chinese Academy of Sciences

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National Natural Science Foundation of China (31672632, 41506189, 41376165)

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    摘要:

    E75是对虾蜕皮激素信号通路的关键调控因子。为了深入了解E75基因的结构和功能,本实验从转录组数据中筛选得到注释为凡纳滨对虾E75基因的转录本,经与基因组序列比对分析,鉴定发现凡纳滨对虾E75基因至少存在6种可变剪接体,分别命名为LvE75-1、LvE75-2、LvE75-3、LvE75-4、LvE75-5和LvE75-6。其中LvE75-1/2/4/5/6均包含DBD和LBD结构域,与果蝇E75A/C有相同的结构域,而LvE75-3仅包含LBD结构域,与果蝇E75D相同。在凡纳滨对虾蜕皮过程中,LvE75-1/2/3/4在D3~D4时期高表达,而LvE75-5和LvE75-6表达量很低。在成体组织中,LvE75各种剪切形式在所有检测的组织中均有表达,且在表皮、肠和鳃中表达较高,在肝胰脏、血细胞和淋巴组织中仅LvE75-3表达较高。实验通过双链RNA干扰LvE75基因的表达,在干扰样品中,检测到Halloween基因中的spophmdib表达下调,shd表达上调,表明LvE75可能通过调控Halloween基因的表达来影响蜕皮激素的合成;同时E75基因的干扰也使同为蜕皮激素早期应答基因的Br-C基因和Ftz-F1基因表达下调,HR3基因表达上调,表明LvE75基因对蜕皮信号通路上下游基因均有作用。在LvE75基因持续干扰12 d后,凡纳滨对虾的蜕皮率显著低于对照组,而死亡率显著高于对照组,说明LvE75基因对凡纳滨对虾的蜕皮和生存具有重要作用。

    Abstract:

    E75 is an important regulator of the ecdysone signaling pathway in shrimp. In order to gain insight into the structure and function of this gene, we screened and analyzed all E75 gene transcripts based on the transcriptome and genome data of Litopenaeus vannamei, and identified 6 alternatively spliced LvE75 isoforms (named LvE75-1, LvE75-2, LvE75-3, LvE75-4, LvE75-5 and LvE75-6). LvE75-1/2/4/5/6 contained DBD and LBD domains consistent with E75A/C of Drosophila melanogaster, and LvE75-3 only had LBD domains consistent with Drosophila E75D. During molting process, LvE75s were highly expressed in D3–D4 stage. In adult tissues, various isoforms of LvE75 were expressed in all tissues and were highly expressed in the epidermis, gut and gill, with only LvE75-3 being highly expressed in hepatopancreas, blood cells and lymphoid tissues. According to the conserved domain sequence, we designed primers for double-stranded RNA (dsRNA) interference. In LvE75 gene RNAi samples, qRT-PCR results showed that spo, phm and dib were down-regulated, and shd was up-regulated, indicating that LvE75 might regulate Halloween genes to influence ecdysone synthesis. Br-C and Ftz-f1 were down-regulated and HR3 was up-regulated after LvE75 were interfered, indicating LvE75 might influence the downstream early response genes of ecdysone signal pathway. After continued interference in LvE75 for 12 days, the molting rate was significantly lower compared with control group, but the death rate of dsLvE75 group was significantly higher, suggesting LvE75 gene played an important role in shrimp molting and survival.

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杜江丽,张晓军,张小溪,袁剑波,高羿,李富花,相建海.凡纳滨对虾E75基因可变剪切形式的鉴定与分析[J].水产学报,2019,43(4):771~781

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  • 收稿日期:2018-01-08
  • 最后修改日期:2018-06-24
  • 录用日期:2018-09-12
  • 在线发布日期: 2019-04-30
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