基于牡蛎疱疹病毒DNA聚合酶基因的巢式PCR检测方法的建立及应用
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上海海洋大学;中国水产科学院黄海水产研究所,农业部海洋渔业可持续发展重点实验室;青岛海洋科学与技术国家实验室海洋渔业科学与食物产出过程功能实验室,中国水产科学研究院黄海水产研究所;青岛海洋科学与技术国家实验室海洋渔业科学与食物产出过程功能实验室,上海海洋大学,中国水产科学研究院黄海水产研究所;青岛海洋科学与技术国家实验室海洋渔业科学与食物产出过程功能实验室

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国家自然科学基金(31502208);现代农业产业技术体系建设专项(CARS-48);青岛海洋科学与技术国家实验室鳌山科技创新计划(2015ASKJ01)


The development and application of nested PCR detection method for Ostreid herpesvirus-1 based on DNA polymerase gene
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College of fisheries and Life Science, Shanghai Ocean University;Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology,Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology,College of fisheries and Life Science, Shanghai Ocean University,Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology

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    摘要:

    为了建立适用于OsHV-1不同变异株的检测方法,在牡蛎疱疹病毒(OsHV-1)3个变异株全基因组序列比对的基础上,筛选到牡蛎疱疹病毒基因组中高度保守的DNA聚合酶(DNA polymerase)基因,据此设计巢式PCR引物,优化PCR反应体系和条件,建立了基于OsHV-1 DNA聚合酶基因的巢氏PCR检测方法(P-nPCR检测方法),利用P-nPCR与CnPCR检测方法对不同年份和宿主来源的OsHV-1疑似感染样本进行检测。结果显示,PnPCR检测方法能稳定地检出100 拷贝/μL的病毒DNA;P-nPCR较C-nPCR检测方法具有更强的特异性和更高的检出率。研究表明,本研究建立的P-nPCR检测方法适用于OsHV-1不同变异株的检测,可为该病毒的检测和流行病学调查提供可靠的技术支持。

    Abstract:

    In order to establish a detection method suitable for different strains of OsHV-1,the primers were designed based on the nuclei acid sequence of the conserved DNA polymerase of OsHV-1. A nested PCR detection method (P-nPCR) was established by optimization of the annealing temperatures of the primers and protocols of PCR. Then, both P-nPCR and C-nPCR were employed to test the infection status of the samples collected from different years and hosts. Our results indicated that the detection limits of the P-nPCR detection method was about 100 copies/μL of recombinant plasmid containing OsHV-1 genes. P-nPCR was more specific than C-nPCR in the detection of different variants of OsHV-1, and resulted in a higher prevalence of OsHV-1 for the same samples. In conclusion, a P-nPCR detection method was developed to detect different variants of OsHV-1 infection. The high specificity of P-nPCR to OsHV-1 ensured that different variants of OsHV-1 could be detected as early as possible, which will provide reliable technical support for the detection and epidemiology studies of OsHV-1.

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高文辉,白昌明,蔡生力,王崇明.基于牡蛎疱疹病毒DNA聚合酶基因的巢式PCR检测方法的建立及应用[J].水产学报,2016,40(3):326~333

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  • 收稿日期:2015-09-01
  • 最后修改日期:2015-12-24
  • 录用日期:2016-03-22
  • 在线发布日期: 2016-03-29
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