锦鲤疱疹病毒单交叉引物等温扩增检测方法的建立
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上海海洋大学水产与生命学院,中国水产科学研究院长江水产研究所,中国水产科学研究院长江水产研究所,中国水产科学研究院长江水产研究所,中国水产科学研究院长江水产研究所

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现代农业产业技术体系建设专项(CARS-46-11);武汉市关键技术攻关计划(2014020202010138)


Establishment of single cross priming isothermal amplification for Koi herpesvirus detection
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Shanghai Ocean University,Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Science,Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Science,Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Science,Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Science

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    摘要:

    为建立一种操作简单、结果准确可靠、结果判定直观、成本低廉的现场快速检测方法,为锦鲤疱疹病毒(Koi herpes virus,KHV)疾病的防控提供技术支撑,根据KHV保守的DNA聚合酶(DNA polymerase,Sph)基因,设计一组单交叉扩增引物,以构建的Sph基因重组质粒作为标准DNA模板,采用单交叉引物等温扩增技术(single cross priming amplification,SCPA)进行扩增,优化反应体系的引物浓度组合、Mg2+浓度、dNTPs浓度、反应温度和时间,并结合核酸试纸条技术(nucleic acid test strip detection method),建立了快速可视化检测锦鲤疱疹病毒的单交叉引物等温扩增检测方法(KHV-SCPA)。结果表明,最佳引物浓度组合为引物2a1s 1.0 μmol/L,2a(2a-Bio)和3a(3a-FIT)各0.5 μmol/L,4s和5a各0.6 μmol/L,Mg2+浓度为8.0 mmol/L,dNTPs浓度为1.2 mmol/L,反应温度63 ℃,时间60 min。本实验扩增产物经凝胶电泳呈现梯形条带,可特异性地检测出KHV,灵敏度较常规PCR方法提高约1 000倍。带有探针的反应产物采用核酸试纸条检测,在3~5 min内即可通过条带出现与否对反应产物进行可视化检测。KHV-SCPA检测方法不依赖昂贵的仪器设备与专业技术人员,可应用于锦鲤疱疹病毒的现场快速检测中,为锦鲤疱疹病毒病的准确快速诊断和有效防控提供了技术支撑。

    Abstract:

    For the establishment of a simple,sensitive and rapid method for the diagnosis,prevention and control of the Koi herpes virus disease,based on the KHV DNA polymerase gene conserved sequence (Sph),a set of single cross amplification primers were designed.The constructed Sph gene plasmid DNA was used as the standard template in the single cross priming amplification (SCPA) and conditions optimization.The detection results showed that the cross circulation amplification could be realized at 63 ℃ within 60 min,and the amplified products showed DNA ladder analyzed by agarose gel electrophoresis.KHV-SCPA could specifically detect KHV with a sensitivity that is about 1 000 times higher than that of the traditional PCR method.In addition,combined with the nucleic acid test strip detection technology,the visual detection of KHV amplified products within 3~5 min was realized.The final concentrations of each component in the optimal reaction condition are as follows:1×ThermoPol® Reaction Buffer,cross primer 2a1s 1.0 μmol/L,displacement primers 2a,3a 0.5 μmol/L,respectively,peeling primers 4s,5a 0.6 μmol/L,Mg2+ 8.0 mmol/L,dNTPs 1.2 mmol/L,Betaine 0.7 mol/L,Bst DNA polymerase 8U,DNA template 1 μL,respectively.The nuclease-free water is added to a total volume of 25 μL.The optimal amplification temperature is 63 ℃,the optimal reaction time is 60 min.KHV-SCPA nucleic acid test strip visual detection method does not require expensive equipment and skilled technicians,which could be used in the on-site diagnosis for effective prevention and control of Koi herpesvirus infection in common carps.

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李聪慧,徐进,刘文枝,周勇,曾令兵.锦鲤疱疹病毒单交叉引物等温扩增检测方法的建立[J].水产学报,2015,39(9):1422~1431

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  • 收稿日期:2015-04-03
  • 最后修改日期:2015-05-15
  • 录用日期:2015-09-20
  • 在线发布日期: 2015-09-23
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