溶藻弧菌诱导马氏珠母贝血淋巴cDNA差减文库的构建及分析
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国家自然科学基金项目(31202023)


Analysis of differentially expressed genes in response to Vibrio alginolyticus stimulation in hemocytes of pearl oyster (Pinctada fucata)
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    摘要:

    为了探讨马氏珠母贝免疫防御机制,筛选免疫防御相关功能基因,以致病性溶藻弧菌人工感染的马氏珠母贝血淋巴为材料,采用抑制性差减杂交(SSH)技术,构建了溶藻弧菌诱导的马氏珠母贝血淋巴cDNA差减文库;以马氏珠母贝管家基因β-actin作为差减指标检测该文库的差减效率;对选取的600个阳性克隆进行测序及生物信息学分析。结果显示,该文库的差减效率可达210倍;PCR阳性检测显示差减片段为100~750 bp,对随机挑取600个克隆的测序结果显示,共获得414个有效EST序列;通过BLAST同源性比对,有167个EST序列(占40.34%)与NCBI数据库中已知功能蛋白质具较高同源性,其中7个EST序列(占1.69%)与免疫防御相关基因同源;此外,204个EST(占49.28%)在数据库中未发现同源序列。研究表明,SSH技术能有效富集马氏珠母贝血淋巴差异表达基因,研究结果为探索马氏珠母贝免疫基因作用机理和调控机制奠定了基础。

    Abstract:

    The pearl oyster,Pinctada fucata,is the most important species cultured widely for production of marine pearls in the coastal provinces of South China,while mass mortalities of the cultured pearl oyster have occurred frequently in juvenile,mother and operated oysters.Understanding the immune defense mechanisms of the pearl oyster may contribute to the development of novel management strategies for diseases control and the long-term sustainability of pearl industry.In this study,a suppression subtractive hybridization(SSH)cDNA library was constructed from the hemocytes of P.fucata challenged with Vibrio alginolyticus,and β-actin gene was used as internal control to estimate the efficiency of subtractive cDNA.A total of 600 clones in the SSH library were randomly selected and sequenced.The results showed that β-actin was subtracted significantly at about 210 folds,suggested that the subtractive cDNA library was successfully constructed.PCR analysis showed that the inserts were 100-750 bp in length.Based on BLAST searches in NCBI,167 ESTs(40.34%)exhibited homology with genes of known functions,and 7 of the 167 ESTs(1.69%)were possibly related to immune and stress functions,and the remaining 204 ESTs had no significant matches with known sequences in the GenBank database.Altogether,the results obtained from this paper provide valuable information for further investigating the molecular immune mechanism of P.fucata.

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王忠良,简纪常,鲁义善,王蓓,陈刚,吴灶和.溶藻弧菌诱导马氏珠母贝血淋巴cDNA差减文库的构建及分析[J].水产学报,2014,38(1):127~135

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  • 收稿日期:2013-06-06
  • 最后修改日期:2013-11-12
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  • 在线发布日期: 2014-01-18
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