基因Ⅰ型草鱼呼肠孤病毒TaqMan Real-Time PCR检测方法的建立及应用
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珠江水产研究所,上海海洋大学水产与生命学院,珠江水产研究所

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国家科技支撑计划(2012BAD25B02);国家自然科学基金(31202026);水科院基本科研业务费(2014A06XK09)


Establishment and application of a TaqMan Real-Time PCR assay for detection of grass carp reovirus genotype Ⅰ
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Pearl River Fisheries Research Institute,College of Fisheries and Life Science, Shanghai Ocean University,Pearl River Fisheries Research Institute

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    摘要:

    为了建立和应用可检测基因Ⅰ型草鱼呼肠孤病毒(GCRV)的荧光定量检测方法,实验根据基因Ⅰ型GCRV的S6保守序列,分别设计扩增目的条带 661 bp普通引物(P1、P2)、扩增目的条带159 bp荧光定量引物(F1、F2)和一条探针;同时构建含有目的片段的PVAX1-S6作为标准质粒,10倍梯度稀释构建质粒拷贝数与Ct值的标准曲线(Y=-3.389X+38.076)。结果表明,此方法在3.9×107~3.9×101拷贝/μL之间相关性较好,R2为0.992,最小检测量为4拷贝/μL;且与基因Ⅱ型、Ⅲ型GCRV以及其他病原核酸无交叉反应。运用该方法检测16份草鱼出血病疑似样品,阳性结果为4份;而普通PCR检测仅2份显示阳性。本研究建立了针对基因Ⅰ型GCRV的荧光定量检测方法,具有高效、特异、灵敏、可重复性强的优点,适合于目前基因Ⅰ型GCRV的临床快速检测和病毒定量分析。

    Abstract:

    In order to establish TaqMan Real-Time PCR for detection of GCRV genotype Ⅰ, the primers were designed according to conservative region of S6 as follows:normal primers designed as P1 and P2 with predicted product size of 661 bp, real time primers designed as F1 and F2 with predicted product size of 159 bp, and a probe.Standard curve(Y=-3.389X+38.076) was generated between the cycle threshold(Ct) and standard plasmid(PVAX1-S6) with 10-fold serial dilutions.The results showed that there was a good linear relationship between Ct value and template concentration with a detection range from 3.9×107 to 3.9×101 copies/μL, and the correlation coefficient reached 0.992 while the detection limit of this method was 4 copies/μL for plasmid template.This assay had a specific detection of the GCRV genotype Ⅰ, and had no detection signals to GCRV genotype Ⅱ, Ⅲ and other pathogens.16 suspected grass carp hemorrhage specimens were tested, and 2 more positive samples were detected using this established assay than normal RT-PCR.The developed TaqMan Real-Time PCR detection method for the GCRV genotype Ⅰ with high efficiency, specificity, sensitivity and repeatability is available for clinical rapid detection and quantitative analysis of the GCRV genotype Ⅰ.

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殷亮,王庆,曾伟伟,李永刚,王英英,刘春,梁红茹,石存斌,吴淑勤.基因Ⅰ型草鱼呼肠孤病毒TaqMan Real-Time PCR检测方法的建立及应用[J].水产学报,2014,38(4):570~576

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  • 收稿日期:2013-10-26
  • 最后修改日期:2014-01-26
  • 录用日期:2014-03-08
  • 在线发布日期: 2014-04-16
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