三角帆蚌钙网蛋白基因cDNA的分子特征与表达分析
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上海海洋大学,上海海洋大学,上海海洋大学,上海海洋大学

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国家自然科学基金项目(31101939);上海市科委基础研究重点项目(10JC1406300);上海市教委科研创新重点项目(13ZZ128);上海市高校知识服务平台项目(ZF1206)


Molecular characterization and expression analysis of calreticulin cDNA from Hyriopsis cumingii
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Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources,Ministry of Education,Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources,Ministry of Education,Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources,Ministry of Education,Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources,Ministry of Education

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    摘要:

    为研究淡水珍珠形成相关基因及调控机理,以三角帆蚌为研究对象,借助cDNA末端快速扩增(RACE)技术获得了三角帆蚌的钙网蛋白基因(calreticulin,HcCRT)cDNA序列,该序列长1 437 bp,包含231 bp的5′非编码区(untranslated region,UTR)和615 bp 3′UTR以及591 bp的开放阅读框(ORF),共编码196个氨基酸残基,包含一段由21个氨基酸组成的信号肽和一段由175个氨基酸的成熟肽,分子量约为22.4 ku,理论等电点5.01。氨基酸序列分析表明,该序列不存在跨膜结构,疏水性分析显示该蛋白整体为亲水性蛋白。氨基酸列比对分析显示,HcCRT具有保守的钙网蛋白家族结构,具有2个保守的钙网蛋白家族标签序列:KHEQNIDCGGGYLKVF和IMFGPDICG,与其他已知物种的CRT具有较高保守性,其中与斑马鱼的相似度为77%,与长牡蛎和马氏珠母贝的相似度为70%。对三角帆蚌HcCRT蛋白序列的二级结构和三级结构进行预测分析,显示该蛋白同时含螺旋和折叠。实时荧光定量PCR分析结果显示,HcCRT在外套膜、血液、鳃、斧足、肝脏、肾脏、肠和闭壳肌等8个组织中均有表达,其中在外套膜中表达量最高,血液次之,在其他组织的表达量极少。初步推测HcCRT参与了三角帆蚌珍珠形成的生物矿化过程。

    Abstract:

    In order to study genes related to pearl formation in freshwater pearl mussel and their regulation mechanism,a 1 437 bp cDNA sequence of calreticulin gene fromHyriopsis cumingii(HcCRT)was obtained by rapid amplification of cDNA ends(RACE).It consisted of a 231 bp 5′-untranslation region(UTR),a 615 bp 3′UTR and a 591 bp open reading frame(ORF).The inferred amino acids sequence was composed of 196 amino acids,including a signal peptide of 21 amino acids and a mature peptide of 175 amino acids.The molecular weight of the peptide was predicted to be 22.4 ku,with a theoretical isoelectric point of 5.01.Amino acid sequence analysis showed that there was no obvious amino acid sequence of membrane domain.Results of the ProtScale online analysis showed that the protein was hydrophilic protein.Homology analysis indicated that HcCRT amino acid had a conservative sequence of calreticulin family and was highly conserved with Danio rerio(77%),Crassostrea gigas(70%),Pinctada fucata(70%).The sequence analysis showed that HcCRT shared two potential calreticulin family signature motifs with CRT from other species,KHEQNIDCGGGYLKVF and IMFGPDICG.The prediction results of H.cumingiiHcCRT protein secondary structure and tertiary structure indicated that the protein contains the alpha helix and beta folding.Real-time quantitative PCR(RT-PCR)showed that HcCRT is expressed in a wide range of tissues including the mantle,blood,gill,foot,liver,kidney,intestine and muscle,with the highest level of transcripts in mantle,followed by blood,while there is rare expression in other tissues.These data suggested that HcCRT might be involved in pearl formation of H.cumingii.This study which was first time to obtain HcCRT gene fromH.cumingii played an important role in exploring pearl formation of H.cumingii.

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夏秀琳,汪桂玲,白志毅,李家乐.三角帆蚌钙网蛋白基因cDNA的分子特征与表达分析[J].水产学报,2013,37(5):679~687

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  • 收稿日期:2012-11-26
  • 最后修改日期:2013-02-08
  • 录用日期:2013-04-22
  • 在线发布日期: 2013-05-18
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