斜带石斑鱼神经坏死病毒CP基因 shRNA干扰载体的构建及效果评价
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农业部海水养殖生态与质量控制重点开放实验室,中国水产科学院南海水产研究所,农业部海水养殖生态与质量控制重点开放实验室,中国水产科学院南海水产研究所,农业部海水养殖生态与质量控制重点开放实验室,中国水产科学院南海水产研究所

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广东省海洋渔业科技推广专项项目(A201001H06);中央级公益性科研院所基本科研业务费专项资金项目(2007TS02);农业部淡水鱼类种质资源与生物技术重点开放实验室开放课题(LFB20070610);中国水产科学研究院淡水生态与健康养殖重点开放实验室开放课题(2007FEA0214)


Construction and evaluation of short hairpin RNA interference vector targeting CP> gene of Epinephelus coioides nervous necrosis virus
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The key Lab of Mariculture, Ecology and Quality Control, Ministry of Agriculture; South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences,,The key Lab of Mariculture, Ecology and Quality Control, Ministry of Agriculture; South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, 510300,The key Lab of Mariculture, Ecology and Quality Control, Ministry of Agriculture; South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, 510300

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    摘要:

    利用Invitrogen公司的在线生物学软件分析斜带石斑鱼神经坏死病毒CP基因,设计针对CP基因不同位置的小发卡RNA(short hairpin RNA,shRNA)干扰序列[其结构特征为正链(19 nt)-环(4 nt)-负链(19 nt)]。化学合成这些序列,并退火连接为双链干扰片段,将双链干扰片段定向克隆到干扰载体pENTRTM/U6中,构建shRNA干扰载体pshRNA-124、pshRNA-896和pshRNA-NNV。然后,用脂质体转染法分别将3种shRNA干扰载体和pEGFP-CP基因共转染导入黑头呆鱼(FHM)肌肉细胞,荧光显微镜观察细胞荧光强度,分析荧光抑制效率,Real-time RT-PCR检测CP基因mRNA的表达水平变化。结果表明,在pEGFP-CP与shRNA干扰载体共转染组,pshRNA-124、pshRNA-896、pshRNA-NNV的荧光抑制效率分别为47%、68%、51%。 3种shRNA干扰载体都有干扰效果,均能干扰绿色荧光蛋白的表达,其中pshRNA-896干扰效率最好。Real-time RT-PCR检测表明,干扰质粒pshRNA-124、pshRNA-896、pshRNA-NNV对pEGFP-CP基因的沉默效率分别约为60%、96%和55%,与对照组相比差异显著(P<0.05)。研究表明,靶向斜带石斑鱼神经坏死病毒CP基因的shRNA干扰载体构建成功,为进一步运用RNA干扰技术进行CP基因的功能研究奠定了基础。

    Abstract:

    The short hairpin RNA interference sequences targeting CP gene of redspotted grouper nervous necrosis virus were designed by using online designing software of Invitrogen Co.,Ltd.The structure consisted of 19 nt sense strand,-4 nt loop and -19 nt antisense strand.These sequences are synthesized,annealed,and cloned into pENTRTM/U6 to construct the shRNA interference vectors named pshRNA-124,pshRNA-896 and pshRNA-NNV,respectively.Then the expression vector of pEGFP-CP and each of the three shRNA interference vectors are co-transfected into FHM cells by using Lipofectamine 2000.Then the expression and inhibition of EGFP are observed by using fluorescent microscope.The mRNA expression level of CP gene is anaylised by using real time RT-PCR.The result shows that pshRNA124,pshRNA896 and pshRNANNV all suppress the EGFP expression with inhibitory efficiency of 47%,68% and 51%,respectively.The pEGFPCP gene silencing efficiencies of pshRNA-124,pshRNA-896 and pshRNA-NNV at mRNA level are 60%,96% and 55%,respectively,significantly higher than that of control(P<0.05).It demonstrates that all of the three shRNAi vectors have interference effects and can interfere with the expression of EGFP,of which pshRNA-896 is the best one.The result above suggests that shRNAi vectors targeting CP gene of redspotted grouper nervous necrosis virus has been successfully constructed,which will be a basis for further study of the function of CP gene with RNAi technique.

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黄桂菊,陈健光,喻达辉,曾令兵,龙华.斜带石斑鱼神经坏死病毒CP基因 shRNA干扰载体的构建及效果评价[J].水产学报,2012,36(3):343~349

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  • 收稿日期:2011-08-30
  • 最后修改日期:2011-11-10
  • 录用日期:2012-02-23
  • 在线发布日期: 2012-03-15
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