真鲷天然抗性相关巨噬蛋白全长cDNA的克隆与序列分析
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中国水产科学研究院黄海水产研究所农业部海洋渔业资源可持续利用重点开放实验室

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国家高技术研究发展计划(863计划)


Cloning and sequence analysis of Nramp cDNA from Pagrus major
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Key Laboratory for Sustainable Utilization of Marine Fisheries Resources Certificated by the Ministry of Agriculture, Yellow Sea Fishery Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China

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    Natural resistance associated macrophage protein ( Nramp) is an innate resistance protein to intracellular parasites, which is expressed plentifully in macrophage cells. Nramp has been studied in mouse, human, cattle, rainbow trout and channel catfish. However, little was known about the structure of Pagrus maj or Nramp. In order to get the complete sequence of Pagrus major Nramp, a pair of primer is designed according to a 200bp known sequence of Pagrus major Nramp cDNA. By the use of SMART RACE, the full Nramp of Pagrus maj or cDNA about 5 000 bp was obtained, including about 200 bp 5c terminal region ( UTR) , complete encoding region and 3c terminal region. There were 3 ployA signals, which showed many possibilities of cutting at 3c terminal region. The character of Pagrus major Nramp nucleotide sequence and deduced amino acid sequence are analyzed. 12 putative transmembrane( TM) regions, a consensus transport motif ( CTM) , a predicted protein kinase C phosphroylation site and three predicted N- link glycosylation sites are indicated in its deduced amino acid sequence. The . consense transport motif. CTM is located between TM8 and TM9. Furthermore, a protein kinase C phosphroylation site and three N- link glycosylation sites were predicted. The alignment of amino acid sequences between Pagr us major Nramp cDNA and several animals is analyzed and the deduced amino acid sequence of Pagrus major Nramp had 77. 8%, 83. 0%, 82. 3%, 80. 0%, 81. 1%, 60. 4%, 70. 3%, 58. 5%, 69. 5% identity w ith rainbow trout A( AAD20721) , rainbow trout B ( AAD20722) , channel catfish ( AF400108) , fathead minnow ( AAF01778) , common carp ( CAB60196) , mouse 1 ( AAA39838) , mouse 2 ( AAC42051) , human 1 ( D50403) , human 2 ( NP - 000608) , respectively . The alignment reveals high conservation in TM and CTM regions. Analysis result makes us get familiar with the structure and character of fish Nramp, furthermore, offer s some information for the enhancement of immunity of fish and genetic amelioration on fish breeding.

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徐美瑜.真鲷天然抗性相关巨噬蛋白全长cDNA的克隆与序列分析[J].水产学报,2005,29(1):

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  • 收稿日期:2014-03-13
  • 最后修改日期:2014-03-13
  • 录用日期:2014-03-13
  • 在线发布日期: 2014-03-13
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